analysisOf3dModels

Roving Diver Disease Surveys

Ian Combs – combsi9892@gmail.com

version: April 29, 2021

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This repository contains scripts and data associated with the roving diver disease monitoring surveys found in Combs IR, Studivan MS, Eckert RJ, Voss JD. 2021. Quantifying the impacts of stony coral tissue loss disease on corals in Southeast Florida through surveys and 3D photogrammetry

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Analysis and walkthroughs accompanying this repository:

Roving Diver Disease survey analysis

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Repository contents:

• code/
  • diseasePrevalenceSurveys.Rmd – disease prevalence statistical analysis Rmarkdown document
  • index.html – disease prevalence statistical analysis webpage
  • diseasePrevalenceSurveys.Rproj – R project file
• data/
  • S1_Dataset.xlsx – disease prevalence data used in analysis
• figures/
  • Fig3.png – plot of average disease prevalence at all there counties over time saved in .png format
  • Fig3.eps – plot of average disease prevalence at all there counties over time saved in .eps format
• tables/
  • Table1.docx – results of PERMANOVA and pairwise comparisons for disease prevalence over site and time

• .gitignore – .gitignore file

• README.md – Repository readme document